Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015912755.1_cds_XP_016462834.1_56016
CDS Infomation

[gene=LOC107785925] [db_xref=GeneID:107785925] [protein=DEAD-box ATP-dependent RNA helicase 53-like isoform X2] [protein_id=XP_016462834.1] [location=complement(join(13433..13770,13962..14151,15712..15873,16579..16803,16977..17075,17179..17590,17774..17901,18647..19024))] [gbkey=CDS]
Sequence

ATGAATAGTCTTTTTGTGTTGAAAAAGTCTTCATCTTCTTTAAATACCTCAAAAAGGGTT
GCTCTTAATGCCCTTACTCATCTATTATTATCGCCGTCAACGTCGTCCGGCGACAAGTTT
ATTTCCGGAAATGCCCTCCCGACTTCTCAATTTAACAGCTTTACCACTGCTACTACTTCA
GTAACTGAGAAATGGGTTGATGGTAAATTTGGGTTTTCTGTAAGAGGGTTTCACTCTAGT
GGTAAATTACATGCTGGATATGCTGTGGCGGATTTGCCTGAGGATGATGAAGGCCTTGAG
ATATCTAAACTTGGTATTTCTCAGGAGATCACTTCTGCTTTGGCAAAAAAAGGAATTACT
AAACTCTTCCCTATTCAGAGAGCTGTTCTGGAACCAGCAATGCAAGGATCTGACATGATT
GGTCGAGCTAGAACTGGAACTGGGAAGACACTAGCTTTTGGCATTCCCATCATGGATAAG
ATCATTCGCTTCAACGAGAAGCATGGACGTGGAAGGAACCCATTGGCTATAGTCTTGGCG
CCTACAAGAGAACTTGCAAAACAAGTGGATAAAGAATTTTTTGAATCCGCTCCTGGTCTG
GATACACTGTGTGTTTATGGTGGTGTCCCCATTTCACGCCAGATGAGTTCCCTTGATAGA
GGAGTAGATATTATTGTGGGCACACCAGGTCGGGTTATTGATCTGCTGAAGAGGGGTGCT
TTGAATTTGTCAGAGATCCAGTTTGTTGTTCTAGATGAAGCTGATCAAATGCTTAATGTG
GGGTTTGCGGAGGATGTTGAGACCATTTTAGAAAATGTTCGACAGAAACATCAGACGATG
ATGTTTTCAGCCACAATGCCAAGTTGGATACTAAAGATTACCAACAAGTTCCTGAAGAAT
CCTATTCACATTGATCTTGTAGGAGATTCTGATCAGAAATTGGCTGATGGCATTTCCTTG
TTTTCAATTGCTTGTGAGATGCATCAAAAACCAGCAGTTCTTGGTCCTCTGATAACTGAG
CACGCAAAGGAAGGGAAGTGCATTGTTTTCACTCAAACTAAACGTGATGCTGATAGACTG
GCTTATGTAATGCAAAAGAGTTTCAGATGTGAAGCTTTACATGGGGACATCTCACAAAGC
CAAAGGGAGAGAACCCTATCAGGTTTTCGCCAAGGTCAATTCAATGTGTTGGTGGCCACT
GATGTTGCTGCTCGAGGACTTGATGTACCTAATGTTGATCTGGTGGTACATTATGAGCTT
CCAAACTCATCAGAGATCTTTGTTCATCGATCCGGGCGAACTGGGCGTGCTGGGAAGAAA
GGAAGTGCAATTCTGATATATTCTTCAAGCCAACATAGGGATGTGAAAGGCATTGAACGC
GATGTGGGATGCAGATTTGTCGAGCTTCCAAGGATAGAAGTGGAGGCTGGAGCAGCAGAC
ATGTTCGGTGACATGGGCAGAAGTGGTGGTCGCTTTGGCTCTTATGGAGGCACGGGAAGT
GGTCGCTTTGGTGATTCGGGTTCAGGTCGTTCTGGTGGCTATGGAAATTTTGGCGGCAGG
TTTGGCGGGCAAGGCGGATTTTCTGGTCGAACAGGTGGATTTGGTGGATCCGATTCTGGA
CGATCAGGGGGTAGCTATGGTGGACCGAGCTCGGGCCGCTCAGGGAATTTTGGTGGCTCC
AATCGTCAGGGAGGATTCGGCAATTTTGGTGGTTCAGACCGTAGTGGTGGTTTCGGAAGT
TCAAATCGGACTGGTGGCTTTGGAAATTCCGAGAGTTCAGATCGCTCAACTGGTTTTGGA
GGATTTGGTTCAGGCCGCTCTAGTGGATTTGGTGGTTTCCGTTCTGATAATGAAAATCGT
TCAAGCCGTTCTGATGACTTTGGAGATGGCAAGGCTAGTGGTGACCAAGGTTTTGGGAGG
AAATTTTTCTAG

Peptide Sequence

PEP ID

XP_016462834.1
PEP Infomation

PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like isoform X2 [Nicotiana tabacum]
Sequence

MNSLFVLKKSSSSLNTSKRVALNALTHLLLSPSTSSGDKFISGNALPTSQFNSFTTATTS
VTEKWVDGKFGFSVRGFHSSGKLHAGYAVADLPEDDEGLEISKLGISQEITSALAKKGIT
KLFPIQRAVLEPAMQGSDMIGRARTGTGKTLAFGIPIMDKIIRFNEKHGRGRNPLAIVLA
PTRELAKQVDKEFFESAPGLDTLCVYGGVPISRQMSSLDRGVDIIVGTPGRVIDLLKRGA
LNLSEIQFVVLDEADQMLNVGFAEDVETILENVRQKHQTMMFSATMPSWILKITNKFLKN
PIHIDLVGDSDQKLADGISLFSIACEMHQKPAVLGPLITEHAKEGKCIVFTQTKRDADRL
AYVMQKSFRCEALHGDISQSQRERTLSGFRQGQFNVLVATDVAARGLDVPNVDLVVHYEL
PNSSEIFVHRSGRTGRAGKKGSAILIYSSSQHRDVKGIERDVGCRFVELPRIEVEAGAAD
MFGDMGRSGGRFGSYGGTGSGRFGDSGSGRSGGYGNFGGRFGGQGGFSGRTGGFGGSDSG
RSGGSYGGPSSGRSGNFGGSNRQGGFGNFGGSDRSGGFGSSNRTGGFGNSESSDRSTGFG
GFGSGRSSGFGGFRSDNENRSSRSDDFGDGKASGDQGFGRKFF

Transcript Sequence

Gene sequence data has not been registered.